+button, under LINKED BUNDLES
DRAGEN Demo Bundle, then click the
DRAGEN Demo Bundle 3.9.5.Steps for other versions after 3.9.5 should be similar.
DRAGEN Germline 3.9.5, and then click
Start New Analysis. Initial set-up details require a
User Reference(pipeline run name meaningful to the user) and an
Entitlement Bundlefrom the drop-down menu under
Illumina DRAGEN Enrichment Demo Datafolder
Illumina Referencesfolder (do not select a methyl-converted reference genome for this tutorial)
trueto realign reads in input BAMs; set to
falseto keep alignments in input BAM files.
trueand no panel of normals (PON) is provided in the Input Files.
GVCFto enable banded gVCF generation for this example
trueto enable HLA typing
Runspage in their project.
Logs) under a given run provide additonal context regarding the status of the completed run. (Note:
Detailsare only available in ICA for graphical CWL pipelines, of which DRAGEN Germline is one.)
Logstab; check the boxes next to the log files to view them in the text viewer. Check the box next to "Show technical steps" to view additional log files.
Datapage, along with all other data loaded to the project (such as assets from a linked entitled bundle). Output analysis will be grouped into folders, so users can click through the directory structure to explore outputs.