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  1. Reference

Software Release Notes

PreviousEnd-to-End User Flow: DRAGEN AnalysisNext2025

Last updated 4 days ago

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This page contains the release notes for the current release. See the subpages for historic release notes.

2025 May 5 - ICA v2.35.0

New Features and Enhancements:

A new version of the has been released with this version of ICA. It is highly recommended to update your connector to the latest version by downloading and installing it from Projects > your_project > Project Settings > Connectivity > Service connectors > Download installer.

  • General

    • Introduced navigation changes to ICA:

      • The navigation menu is now collapsible.

      • The Product overview selection menu moved from top left to top right.

      • The back button has been replaced by a breadcrumb menu.

      • The Projects overview back button is now part of the breadcrumb menu.

    • Sorting and filtering parameters are now part of the URL meaning they are retained

      when sharing a link, or when entering the details of an object in the grid and going

      back to the grid screen.

    • Moved the Export button to the left side of the footer of the grid as a small tertiary

      button for more consistency and ease of use.

    • Improved error message when a duplicate request is sent to create credentials via the

      API.

    • Improved link sharing so that user is brought to the correct page after logging in.

    • When creating a project with only one storage bundle available, that storage bundle is

      now automatically selected.

  • Data Management

    • Made the contributor role for bundles more consistent by removing edit rights for

      details and terms of use from the role.

    • Bundle sharing is now limited to users with bundle administrator role.

    • It is now possible to download one or more files from the data grid and details, even

      when the format has no viewer associated.

  • Flow

    • Pipelines now have an option to define patterns for detecting report files in the analysis

      output. On opening the analysis result window of this pipeline, an additional tab will

      display these report files.

    • New API endpoint POST/api/projects/\{projectId}/analysis:nextflowWithCustomInput

      for starting a Nextflow pipeline which uses both YAML and JSON as custom input.

    • For advanced output mapping the timelines and execution reports are now available for

      Nextflow pipelines.

    • Performance improvement in the response times for analyses with high number of

      inputs.

    • Improved aborting running analyses by faster process cancellation.

    • Analyses prices are rounded to two decimals for easier reading. More decimals are

      retained for calculations and invoicing.

  • Cohorts

    • Handing previously unrecognized consequence term protein_altering_variant during

      somatic mutation JSON ingestion to support TSO data inputs.

    • Users can now input a comma-separated list of up to 100 subject identifiers to filter

      cohorts directly by subject ID. This new filter is optional and integrates with existing

      filters using AND logic across filters and OR logic within the list. Subject counts update

      dynamically as IDs are added or removed.

    • Improved Needle Plot and Comparison Needle Plot filtering by making key variant filters

      (% gnomAD frequency, Sample Count, primateAI score) simultaneously and updating

      layout for better usability and alignment.

    • Cohorts phenotypic data available in base tables after input of user data as data sets in

      Cohorts. Tables will also accompany a data set when shared through a bundle.

    • Replaced Angular Material tab components with ILMN standard tab components in the

      Cohorts UI.

    • Added missing consequence values for somatic variants from TSO.

    • Cohorts reference database for PrimateAI includes previously not included genes.

Fixed Issues

  • General

    • Users entering and leaving workspaces are now more accurately tracked in the

      workspace history.

    • Fixed an issue which caused problems when printing out milliseconds from the shell.

    • Fixed an issue which prevented storage credentials from being shared without external

      approval.

    • During docker image creation 'Name' and 'Version' are now mandatory to fill in.

    • Fixed an issue in the API so it now returns the error in the appropriate dto format when

      an incorrect or invalid dockerDataProjectId is provided in the request body

  • Data Management

    • Fixed an issue which caused user who already had permission to a project or bundle to

      still appear in the list of users without permissions when trying to add more users.

    • Improved user verification when modifying the project owner.

    • Fixed an issue where the old project owner was not granted upload and download

      permissions when a new project owner was chosen for his project.

    • Fixed an issue which resulted in error 400/500 when encountering data connection

      problems. Retries have been implemented and if it still fails it will now show a 503

      instead of a 400 or 500.

    • Improved error handling during storage configuration creation.

    • Fixed an issue where cloned pipelines would appear to override externally linked

      pipelines with the same name. Both are now present in the list of pipelines.

    • Fixed an issue which caused the ica_logs folder to not always be present

    • Fixed an issue where sample metadata would not immediately be shown.

  • Flow

    • The project connector would incorrectly label samples from BSSH as being linked from

      another app, thus preventing their removal. This has been fixed.

    • Improved handling of database issues when analysis is stuck in progress.

  • Cohorts

    • Fixed issue where Firefox users could not export results.

    • Fixed issue where the [DELETE] /v1/study/{studyId} API returned a 500 error when

      deleting a valid and existing study.

    • Fixed issue where the spinner would remain indefinitely in the import wizard after a

      backend 500 error, instead of displaying an error message.

    • Fixed issue where using the dropdown for project information on a single subject was

      not working in Fire Fox.

    • Fixed an issue where modifying variant and phenotype category filters after searching

      in the PheWAS table caused the filters to stop applying to the table.

Service Connector