2025
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This page contains the documentation release notes for the current release. See the subpages for historic release notes.
Navigational change. The Projects navigation item moved from the left-side navigation to the top of the Project details. \
New Functionality
Reports now have an option to define patterns for detecting report files in the analysis output. On opening an analysis result window of this pipeline, an additional tab will display these report files.
Added information on sorting and filtering behavior when sharing links. These are now retained when sharing or navigating away from an inventory.
Updated Functionality
Documented navigation changes.
The navigation menu is now collapsible
The Product overview selection menu moved from top left to top right
The back button has been replaced by a breadcrumb menu
The Projects overview moved from top left to top center-left
Updates to cohorts documentation
Added information on /api/projects/{projectId}/analysis:nextflowWithCustomInput
Improvements to chapter pipeline development in bench.
General Documentation updates
Replaced directory with folder where possible for consistency
Added information that cloned pipelines and externally linked pipelines can coexist in a project even if they have the same name.
Improved CLI section on version numbers for better reading flow
Added information that you can only link bundles to a project if that project belongs to a tenant who has access to the bundle
Added that when changing project owner, the project owner will automatically get all necessary permissions.
Added prerequisite that both the CLI and the service connector require x86 architecture or emulation.
Improved information on Pipeline linking
New Functionality
New documentation on Pipeline Development in Bench has been added. (Experimental Feature)
Added documentation on non-indexed folders to the data section
Added /api/projects/{projectId}/analyses/{analysisId}/usage as API endpoint for analysis price on the pricing page
Documented the single-user option of workspaces
Updated Functionality
Documented the move of storage credentials from System Settings > Storage > Credentials to System Settings > Credentials.
Updated that project owner editing is now done at Projects > your_project > Project Settings > Details > Edit
Added ICA_DATA_105 to notifications
Updates to data transfer screen section
Documented that DRAGEN pipelines (> 4.3.13) are no longer cloneable as they contain proprietary information
Documented version updates with Added support of Nextflow version 24.10.2 (Experimental) and removal of support for Java version 8
Updated scheduler descriptions
General Documentation Updates
Improved description of roles in bundles
Added information that you can only link bundles to a project if that project belongs to a tenant who has access to the bundle.
Added warning to not add tables with the same name to the same bundle as this will create conflicts
Added information that exporting float values from base will result in different formats between JSON and CSV formats
Clarified that uploaded files are in status partial until upload is complete, when they become available
Documented that metadata is no longer searchable in the project search panel
Various updates to Bench documentation
Added TX- Ramp certification to security and compliance
Added background information on tags
General
Added experimental feature: Streamable inputs for JSON-based input forms. Adding "streamable":true to an input field of type "data" makes it a streamable input.
Documented version updates with removal of support for Java version 8 and added note on decommissioning of Nextflow 20.10.0 in the near future
Removed section on showing current workspace user as the functionality has been removed
Added information to notifications to incorporate a failsafe mechanism by polling long-running analysis states when integrating with external software
Added known issue: The event for analysis status changes with event code ICA_EXEC_028 is generated but not shown in the event log for ICA Projects with billing mode tenant. Notifications for this event will keep working
Flow
Added information how to see the price of an Analysis at Projects > your_project > Flow > Analyses > your_analysis > Details tab. See pricing information for details.
Documented that aborting an analysis is now also possible from the details screen
Updated Dragen Analysis walkthrough example to be in sync with latest software version.
Update OAuth access token lifespan from 2 to 12 hours in project details
Documented that it is now possible to navigate from analysis results to the data of that analysis
CLI
Added links to CLI version 2.33
Data management
Documented updates to legal screen and tenant invite of bundles.
Storage
Extended documentation on Activity - Data transfers screen
Added emphasis on not using the root folder of your own S3 storage.
General
Extended documentation on Activity - Data transfers screen
Verified and updated the project navigation structure in the online help
Flow
Documented the "display failed steps" option of failed analyses
Documented the ongoing actions column from the column list in the data view which allows to see if there are any ongoing actions on data
Documented the additional actions which are now possible with externally-managed projects
Updated the list of formats
Added information on bundle sharing functionality which offers more protection for sensitive information than using the ICA teams page to invite other users to use your assets
Update to JSON-form emptyValuesAllowed parameter description. When maxValues is greater than 1 or and emptyValuesAllowed is true, the values may contain null entries. Default is false
Added information that FPGA-large is only available in region US-east-1 and both FPGA-large and himem-X-large have limited availability
Documented GPU-small and GPU-medium resource types for compute
CLI
Improved documentation for Nextflow JSON project pipelines start nextflowjson example
Bench
Added GPU-large to bench workspace sizes
Added information on downloading Docker images
Added information to indicate there is no need to download the workspace command-line interface as you can run it from within the workspace
Cohorts
Updates to Spinner and Needle Plots information
1 DRAGEN pipelines running on fpga2 compute type will incur a DRAGEN License cost of 0.10 iCredits per gigabase of data processed, with additional discounts as shown below.
80 or less gigabase per sample - no discount - 0.10 iCredits per gigabase
> 80 to 160 gigabase per sample - 20% discount - 0.08 iCredits per gigabase
> 160 to 240 gigabase per sample - 30% discount - 0.07 iCredits per gigabase
> 240 to 320 gigabase per sample - 40% discount - 0.06 iCredits per gigabase
> 320 and more gigabase per sample - 50% discount - 0.05 iCredits per gigabase
If your DRAGEN job fails, no DRAGEN license cost will be charged.