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Known Issues

  • Manual refresh on Data view required after archive/unarchive action to reflect new status
  • API: DELETE /api /connectors /{connectorId} /uploadRules /{uploadRuleId} does not delete the upload rules. Users can delete connector rules via the GUI
  • Project menu does not update when navigating into a Project in Chrome
  • User with ‘Data Provider’ role cannot view the Data page in the UI
  • Unable to add tags to sample during creation
  • Sample deleteDeep API fails with 500 error code when sample contains a linked folder in archived status
  • Unable to set file formats BedGraph, Bisulfite Converted Index, CNS.TAB, NextSeq/MiSeq/HiSeq RTA BCL, VCF.IDX - results in the UNKNOWN format when viewing file details
  • Some files in Data, including SampleSheets, will not export to Excel with error ‘void org.apache.poi.ss.usermodel.CellStyle.setAlignment(short)'
  • User is unable to see details of bundles they have access to in the GUI
  • Unable to download a folder via 'Schedule for download' in Folder Details window
  • Flow: Workflows attempting to provision nodes of instance types with capacity issues may result in prolonged waiting periods and/or pipeline run failures
  • Flow: Graphical CWL pipelines containing Tools with any Input file with a populated "format" will always fail
  • Flow: Incorrect failure cause reported through error logs when infrastructure fails to spin up nodes for pipeline steps
  • Flow: Issue handling special characters in input file/folder paths
  • Flow: Unable to specify secondaryFiles when launching CWL pipeline analyses via API
  • Flow: CWL file/directory pipeline inputs are not mounted when provided within nested structures (ie, CommandInputRecordSchema, CommandInputArraySchema)
  • Flow: “Internal server error” is thrown when an Analysis with 50,000 identical files as input is started
  • Flow: Workflows may get stuck “In progress” without succeeding/failing for 4 days
  • Base: Query download in JSON format returns an error
  • Base: In some exceptional cases the Save button may not be active
  • Bench: Unable to enter a Bench workspace stuck in Starting status
  • Bench: No clear message in UI when invalid characters are entered when creating a new Workspace
  • Cohorts: Import Jobs: there is no way to copy subject IDs in Failed import
  • Cohorts: Correlation plot: Intermittently no results in bubble plot, while there are results in Scatter plot
  • Cohorts: 'Import Jobs' page is loaded within Data Sets frame if import was initiated from Data Sets page in ICA
  • Cohorts: Cohort bookmarks created before Cohorts Version 1.4, may not appear and need to be recreated to use the Cohort Share feature.
  • Cohorts: Import job information is being displayed in the Data Sets tab
  • Cohorts: Bubble fails to load after viewing a correlation in a comparison
  • Cohorts: Long sample names are causing a misalignment with other sample information in the grid
  • Cohorts: The variant ID list under the needle plot does not display all study names where the variants are found
  • Cohorts: Archived shared cohorts are displaying in export lists of cohorts
  • Cohorts: Long chart axis labels overlap with tick marks on graph
  • Cohorts: Gene Expression table does not display with TGCA data
  • Cohorts: Numbers overflow outside of the UI box for numeric ranges