> For the complete documentation index, see [llms.txt](https://help.ica.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.ica.illumina.com/tutorials.md).

# Tutorials

- [Nextflow Pipeline](https://help.ica.illumina.com/tutorials/nextflow.md)
- [Nextflow DRAGEN Pipeline](https://help.ica.illumina.com/tutorials/nextflow/nextflow-dragen-pipeline.md)
- [Nextflow: Scatter-gather Method](https://help.ica.illumina.com/tutorials/nextflow/scatter-gather-nextflow.md)
- [Nextflow: Pipeline Lift](https://help.ica.illumina.com/tutorials/nextflow/nextflow_pipeline_liftovers.md)
- [Nextflow CLI](https://help.ica.illumina.com/tutorials/nextflow/nextflow-cli-tutorial.md)
- [CWL CLI Pipeline Execution](https://help.ica.illumina.com/tutorials/cli-cwl.md)
- [CWL Graphical Pipeline](https://help.ica.illumina.com/tutorials/cli-cwl/cwl-graphical-pipeline.md)
- [CWL DRAGEN Pipeline](https://help.ica.illumina.com/tutorials/cli-cwl/cwl-dragen-pipeline.md)
- [CWL: Scatter-gather Method](https://help.ica.illumina.com/tutorials/cli-cwl/scatter-gather.md)
- [Base Basics](https://help.ica.illumina.com/tutorials/base_basics.md)
- [Base: SnowSQL](https://help.ica.illumina.com/tutorials/base_basics/base_snowsql.md)
- [Base: Access Tables via Python](https://help.ica.illumina.com/tutorials/base_basics/dashboard.md)
- [Bench ICA Python Library](https://help.ica.illumina.com/tutorials/bench-ica-python-library.md)
- [API Beginner Guide](https://help.ica.illumina.com/tutorials/api-introduction.md)
- [Launching a DRAGEN Pipeline](https://help.ica.illumina.com/tutorials/launching-a-dragen-pipeline.md)
- [End-to-End User Flow: DRAGEN Analysis](https://help.ica.illumina.com/tutorials/end-to-end-1.md)
- [Data Transfer Options](https://help.ica.illumina.com/tutorials/datatransfer.md)
- [Pipeline Chaining on AWS](https://help.ica.illumina.com/tutorials/pipeline_chaining_aws.md)


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://help.ica.illumina.com/tutorials.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
