The coordination and orchestration of automated secondary analysis following a sequencing run involves many moving parts and potential failure modes. The following section provides guidance on common error scenarios.

Secondary Analysis Troubleshooting

Secondary analysis failures may happen for a variety of reasons. When an error occurs, the Sequencing Run in BaseSpace will indicate a failure with the analysis. Depending on the specific failure, the workflow session and/or the orchestrated analysis in ICA will indicate a "Failed" status with an Error output in the details view.