Sequencer Reference

This page provides guidance on sequencer-specific limitations, constraints, and capabilites.

InstrumentRun SetupRun MonitoringData Uploaded to ICAAutomatic Secondary Analysis in ICAManual Secondary Analysis in ICA

NovaSeq X Series

BaseSpace Run Planning, Sample Sheet

BaseSpace

BCLs, On-instrument analysis results

BCL Convert, DRAGEN Germline, DRAGEN Enrichment, DRAGEN RNA

DRAGEN Pipelines, Custom Pipelines

NovaSeq 6000/6000 Dx

BaseSpace Run Planning, Sample Sheet

BaseSpace

BCLs

BCL Convert, TSO 500 Tissue, ctDNA

DRAGEN Pipelines, Custom Pipelines

NextSeq 1000/2000

BaseSpace Run Planning, Sample Sheet

BaseSpace

BCLs

BCL Convert

DRAGEN Pipelines, Custom Pipelines

NextSeq 500/550/550 Dx

BaseSpace Run Planning, Sample Sheet

BaseSpace

BCLs

BCL Convert, TSO 500 Tissue, ctDNA, DRAGEN Amplicon 4.2+ (for NextSeq 550 and NextSeq 550 Dx)

DRAGEN Pipelines, Custom Pipelines

MiSeq/MiSeq Dx

BaseSpace Run Planning, Sample Sheet

BaseSpace

BCLs

BCL Convert, DRAGEN Amplicon 4.2+ (requires control software v4.1)

DRAGEN Pipelines, Custom Pipelines, BCL Convert

MiniSeq

BaseSpace Run Planning, Sample Sheet

BaseSpace

BCLs

BCL Convert, DRAGEN Amplicon 4.2+

DRAGEN Pipelines, Custom Pipelines

iSeq 100

BaseSpace Run Planning, Sample Sheet

BaseSpace

BCLs

BCL Convert, DRAGEN Amplicon 4.2+

DRAGEN Pipelines, Custom Pipelines

  • NextSeq 550 Dx, MiSeq Dx and NovaSeq 6000 Dx only supported in RUO (Research Use Only) mode.

  • NovaSeq X series instruments support upload of on-instrument DRAGEN secondary analysis results to ICA. Must be configured during run setup.

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