Sequencer Reference
This page provides guidance on sequencer-specific limitations, constraints, and capabilites.
Instrument | Run Setup | Run Monitoring | Data Uploaded to ICA | Automatic Secondary Analysis in ICA | Manual Secondary Analysis in ICA |
---|---|---|---|---|---|
NovaSeq X Series | BaseSpace Run Planning, Sample Sheet | BaseSpace | BCLs, On-instrument analysis results | BCL Convert, DRAGEN Germline, DRAGEN Enrichment, DRAGEN RNA | DRAGEN Pipelines, Custom Pipelines |
NovaSeq 6000/6000 Dx | BaseSpace Run Planning, Sample Sheet | BaseSpace | BCLs | BCL Convert, TSO 500 Tissue, ctDNA | DRAGEN Pipelines, Custom Pipelines |
NextSeq 1000/2000 | BaseSpace Run Planning, Sample Sheet | BaseSpace | BCLs | BCL Convert | DRAGEN Pipelines, Custom Pipelines |
NextSeq 500/550/550 Dx | BaseSpace Run Planning, Sample Sheet | BaseSpace | BCLs | BCL Convert, TSO 500 Tissue, ctDNA, DRAGEN Amplicon 4.2+ (for NextSeq 550 and NextSeq 550 Dx) | DRAGEN Pipelines, Custom Pipelines |
MiSeq/MiSeq Dx | BaseSpace Run Planning, Sample Sheet | BaseSpace | BCLs | BCL Convert, DRAGEN Amplicon 4.2+ (requires control software v4.1) | DRAGEN Pipelines, Custom Pipelines, BCL Convert |
MiniSeq | BaseSpace Run Planning, Sample Sheet | BaseSpace | BCLs | BCL Convert, DRAGEN Amplicon 4.2+ | DRAGEN Pipelines, Custom Pipelines |
iSeq 100 | BaseSpace Run Planning, Sample Sheet | BaseSpace | BCLs | BCL Convert, DRAGEN Amplicon 4.2+ | DRAGEN Pipelines, Custom Pipelines |
NextSeq 550 Dx, MiSeq Dx and NovaSeq 6000 Dx only supported in RUO (Research Use Only) mode.
NovaSeq X series instruments support upload of on-instrument DRAGEN secondary analysis results to ICA. Must be configured during run setup.
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