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Sequencer Reference

This page provides guidance on sequencer-specific limitations, constraints, and capabilites.
Instrument
Run Setup
Run Monitoring
Data Uploaded to ICA
Automatic Secondary Analysis in ICA
Manual Secondary Analysis in ICA
NovaSeq X Series
BaseSpace Run Planning, Sample Sheet
BaseSpace
BCLs, On-instrument analysis results
BCL Convert, DRAGEN Germline, DRAGEN Enrichment, DRAGEN RNA
DRAGEN Pipelines, Custom Pipelines
NovaSeq6000/6000 Dx
BaseSpace Run Planning, Sample Sheet
BaseSpace
BCLs
BCL Convert, TSO 500 Tissue, ctDNA
DRAGEN Pipelines, Custom Pipelines
NextSeq 1000/2000
BaseSpace Run Planning, Sample Sheet
BaseSpace
BCLs
BCL Convert
DRAGEN Pipelines, Custom Pipelines
NovaSeq 500/550/550 Dx
BaseSpace Run Planning, Sample Sheet
BaseSpace
BCLs
BCL Convert, TSO 500 Tissue, ctDNA
DRAGEN Pipelines, Custom Pipelines
MiSeq/MiSeq Dx
Sample Sheet
BaseSpace
BCLs
BCL Convert
DRAGEN Pipelines, Custom Pipelines
MiniSeq
Sample Sheet
BaseSpace
BCLs
BCL Convert
DRAGEN Pipelines, Custom Pipelines
iSeq 100
Sample Sheet
BaseSpace
BCLs
BCL Convert
DRAGEN Pipelines, Custom Pipelines
  • NextSeq 550 Dx and MiSeq Dx supported in RUO mode only.
  • NovaSeq X series instruments support upload of on-instrument DRAGEN secondary analysis results to ICA. Must be configured during run setup.