Links

Public Data Sets

ICA Cohorts comes front-loaded with a variety of publicly accessible data sets, covering multiple disease areas and also including healthy individuals.
Data set
Samples
Diseases/Phenotypes
Reference
1kGP-DRAGEN
3202 WGS: 2504 original samples plus 698 relateds
Presumed healthy
DDD
4293 (3664 affected), de novos only
Developmental disorders
EPI4K
356, de novos only
Epilepsy
ASD Cohorts
6786 (4266 affected), de novos only
Autism Spectrum disorder
De Ligt et al.
100, de novos only
Intellectual disability
Homsy et al.
1213, de novos only
Congenital heart disease (HP:0030680)
Lelieveld et al.
820, de novos only
Intellectual disability
Rauch et al.
51, de novos only
Intellectual disability
Rare Genomes Project
315 WES (112 pedigrees)
Various
https://raregenomes.org/
TCGA
ca. 4200 WES, ca. 4000 RNAseq
12 tumor types
https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga
GEO
RNAseq
Auto-immune disorders, incl. asthma, arthritis, SLE, MS, Crohn's disease, Psoriasis, Sjögren's Syndrome
For GEO/GSE study identifiers, please refer to the in-product list of studies
RNAseq
Kidney diseases
For GEO/GSE study identifiers, please refer to the in-product list of studies
RNAseq
Central nervous system diseases
For GEO/GSE study identifiers, please refer to the in-product list of studies
RNAseq
Parkinson's disease
For GEO/GSE study identifiers, please refer to the in-product list of studies